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Consistent layer numbering for filetypes and metadata#126

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thompson318 merged 4 commits into
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st/layer_names
Jun 8, 2026
Merged

Consistent layer numbering for filetypes and metadata#126
thompson318 merged 4 commits into
mainfrom
st/layer_names

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@thompson318

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Addressing #102

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github-actions Bot commented Jun 8, 2026

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Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

  • 🎯 correct output
  • 🖼️ correct figures
  • ❓ new warnings
  • ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/HealthBioscienceIDEAS/microscopy-novice/compare/md-outputs..md-outputs-PR-126

The following changes were observed in the rendered markdown documents:

 filetypes-and-metadata.md | 38 +++++++++++++++++++-------------------
 md5sum.txt                |  2 +-
 2 files changed, 20 insertions(+), 20 deletions(-)
What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2026-06-08 13:57:17 +0000

@K-Meech K-Meech left a comment

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Thanks @thompson318 - looks good. I think the 0/1/2 numbering is much clearer 😄

Spotted a few remaining references to image layer 3 below:

Comment thread episodes/filetypes-and-metadata.md Outdated
Comment thread episodes/filetypes-and-metadata.md Outdated
Comment thread episodes/filetypes-and-metadata.md Outdated
thompson318 and others added 3 commits June 8, 2026 14:54
Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
@thompson318
thompson318 requested a review from K-Meech June 8, 2026 13:55
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026

@K-Meech K-Meech left a comment

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Thanks @thompson318 - all looks good to me!

@thompson318
thompson318 merged commit 838a0c8 into main Jun 8, 2026
6 checks passed
@thompson318
thompson318 deleted the st/layer_names branch June 8, 2026 15:06
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026
Auto-generated via `{sandpaper}`
Source  : 838a0c8
Branch  : main
Author  : Stephen Thompson <s.thompson@ucl.ac.uk>
Time    : 2026-06-08 15:06:02 +0000
Message : Consistent layer numbering for filetypes and metadata (#126)

* Consistent layer numberng

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

---------

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
github-actions Bot pushed a commit that referenced this pull request Jun 8, 2026
Auto-generated via `{sandpaper}`
Source  : 0633855
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2026-06-08 15:08:12 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 838a0c8
Branch  : main
Author  : Stephen Thompson <s.thompson@ucl.ac.uk>
Time    : 2026-06-08 15:06:02 +0000
Message : Consistent layer numbering for filetypes and metadata (#126)

* Consistent layer numberng

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

---------

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
github-actions Bot pushed a commit that referenced this pull request Jun 9, 2026
Auto-generated via `{sandpaper}`
Source  : 0633855
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2026-06-08 15:08:12 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 838a0c8
Branch  : main
Author  : Stephen Thompson <s.thompson@ucl.ac.uk>
Time    : 2026-06-08 15:06:02 +0000
Message : Consistent layer numbering for filetypes and metadata (#126)

* Consistent layer numberng

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

* Update episodes/filetypes-and-metadata.md

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>

---------

Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
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2 participants